Cloud computing support via Kubernetes.
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when files are present) Connection pool for SFTP and FTP remote files, increasing download performance Require correct minimum version of smart_open Added workflow.source_path(path), allowing to get the correct path relative to the current Snakefile, even when Snakefile is included via URL Fixed bugs in module system Fixed issue with checkpoints and ruleorder where phantom dependencies are not properly removed from the DAG Disable tibanna behavior that opens a browser window for each job Allow Paramspace(., filename_params="*"), meaning that all columns of the paramspace will be encoded into the filename Avoid PATH modification in cluster jobs For large sets of input files, pass files to wait for (FS latency) as a file instead of command line args ¶ If they are not present, TBD will be displayed and function will be reevaluated immediately before the job is executed (i.e. Improvements in the docs (resource usage, best practices, remote files) functions given to params can now safely open input files generated by previous rules.Still -j and –jobs works as a fallback for local execution Added the ability to overwrite resources via –set-resources Various fixes for Windows execution Fixed a bug with fractional resources Fixed timeouts and other issues in google life science backend Fixed a bug with missing conda frontend definitions in subworkflows Skip envvar checking during linting Fixed a bug causing container images in modules to be ignored - ¶ There is a new default resource tmpdir (by default reflects the system setting), which is automatically used for temporary files by shell commands and scripts which properly consider the usual environment variables like $TMP, $TEMP, $TMPDIR The CLI flags –jobs and –cores are now separated, with –cores being responsible for local cores and global cores in the cluster case, and –jobs being responsible for number of jobs.Allow to set the default profile via the environment variable $SNAKEMAKE_PROFILE.Integrating foreign workflow management systems.
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